snipe kmers2reads
Reconstruct k-mer read sequences from a —keep-acgt signature into FASTA.
Each FASTA header is >kmN k1ab=<K1 abundance> k2ab=<K2 abundance>, where
k1ab / k2ab are the K1 and K2 abundances of that edgemer.
snipe kmers2reads <input> [OPTIONS]Arguments
Section titled “Arguments”| Name | Type | Required | Description |
|---|---|---|---|
input | text | yes | Input —keep-acgt .snipesig signature file. |
Options
Section titled “Options”| Flag | Type | Required | Default | Description |
|---|---|---|---|---|
-o, --output | text | no | — | Output FASTA path. ’-’ (or omitted) streams to stdout; a ‘.gz’ suffix gzip-compresses; any other path is plain FASTA. |
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